JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM47A_chrX_34124752_34137314	0/0	c0009	2415	2	2	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0010	2376	1	0	0	1	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0011	2376	1	1	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0012	2376	1	0	0	1	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0013	2340	1	0	0	0	0	1	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0014	2376	1	0	1	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0015	2375	1	0	0	1	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0016	2376	1	1	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0017	2376	1	0	0	1	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0018	2376	1	0	0	1	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0019	2376	1	1	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0020	2375	1	0	0	1	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47B_chrX_34937796_34949915	1/1	c0001	1938	297	68	47	143	9	28	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0002	1938	5	0	3	0	2	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0003	1938	4	0	3	0	1	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0004	1938	4	0	0	4	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0005	1938	2	0	0	2	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0006	1938	2	0	0	2	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0007	1938	2	0	0	0	1	1	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0008	1938	2	2	0	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0009	1938	1	0	0	1	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0010	1938	1	1	0	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0011	1938	1	1	0	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0012	1938	1	1	0	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0013	1938	1	0	1	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0014	1938	1	0	0	0	0	1	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0015	1938	1	1	0	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0016	1938	1	0	0	1	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0017	1938	1	0	0	0	0	1	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0018	1939	1	0	0	1	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0019	1936	1	0	0	1	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0020	1939	1	0	0	1	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	c0021	1938	1	1	0	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47C_chrX_37003366_37016664	1/1	c0001	3108	197	10	40	114	11	20	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0002	3144	33	12	9	10	0	2	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0003	3108	26	22	4	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0004	3108	25	10	4	1	2	8	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0005	3108	3	3	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0006	3108	3	3	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0007	3108	2	2	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0008	3108	2	0	0	2	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0009	3144	2	0	0	2	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0010	3108	2	2	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0011	3108	2	0	0	2	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0012	3107	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0013	3108	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0014	3108	1	0	1	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0015	3108	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0016	3108	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0017	3109	1	0	0	1	0	0	copy fasta	FAM47C	chrX	37003366	37016664