JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM47C_chrX_37003366_37016664	0/0	c0018	3108	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0019	3108	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0020	3144	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0021	3108	1	0	1	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	c0022	3108	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47E_chr4_76246721_76288783	1/0	c0001	1182	149	22	22	88	3	13	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	c0002	1182	131	19	28	66	4	14	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	c0003	1182	53	31	3	14	4	1	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	c0004	1182	39	13	9	8	1	8	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	c0005	1182	8	7	0	0	0	1	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/1	c0006	1182	3	0	2	0	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	c0007	1182	2	0	0	2	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	c0008	1182	2	0	0	2	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	c0009	1182	1	0	1	0	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	c0010	1182	1	0	0	1	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	c0011	1182	1	0	0	1	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	c0012	1182	1	0	0	0	0	1	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	c0013	1182	1	0	1	0	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM50A_chrX_154439141_154455654	1/1	c0001	1020	272	74	60	100	7	29	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	c0002	1019	1	0	0	1	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	c0003	1021	1	0	0	1	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	c0004	1022	1	0	0	1	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50B_chr6_3844373_3856317	1/1	c0001	978	465	89	81	229	18	46	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	c0002	978	9	0	0	9	0	0	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	c0003	978	2	2	0	0	0	0	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	c0004	913	1	0	1	0	0	0	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	c0005	978	1	1	0	0	0	0	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	c0006	978	1	1	0	0	0	0	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	c0007	978	1	1	0	0	0	0	copy fasta	FAM50B	chr6	3844373	3856317
FAM53A_chr4_1634887_1689313	1/1	c0001	1197	229	50	51	97	6	23	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0002	1197	53	6	17	9	4	17	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0003	1197	48	31	8	9	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0004	1197	3	3	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0005	1197	2	0	0	2	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0006	1197	2	2	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0007	1197	2	0	0	2	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0008	1197	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0009	1197	1	0	0	0	0	1	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0010	1197	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0011	1197	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0012	1197	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0013	1197	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0014	1197	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0015	1197	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0016	1197	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0017	1197	1	0	0	0	0	1	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	c0018	1197	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53B_chr10_124614292_124749378	1/1	c0001	1269	314	74	41	149	14	34	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	c0002	1269	7	0	7	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	c0003	1269	3	0	0	3	0	0	copy fasta	FAM53B	chr10	124614292	124749378