JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM53B_chr10_124614292_124749378	0/0	c0004	1269	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	c0005	1269	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	c0006	1269	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	c0007	1269	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	c0008	1269	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	c0009	1269	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53C_chr5_138333266_138354729	1/1	c0001	1179	427	89	81	195	16	44	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	c0002	1043	1	0	1	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	c0003	1179	1	0	0	0	0	1	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	c0004	1179	1	1	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	c0005	1179	1	0	0	0	0	1	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	c0006	1179	1	0	0	1	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM72A_chr1_206181179_206207839	1/1	c0001	450	345	96	62	135	10	40	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	c0002	450	1	0	0	1	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72B_chr1_121162646_121189340	1/1	c0001	450	364	76	70	152	18	46	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	c0002	450	13	13	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	c0003	450	2	0	0	0	0	2	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	c0004	450	1	1	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72C_chr1_143950287_143976986	0/0	c0001	450	229	52	49	96	10	22	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	c0002	450	11	9	0	2	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	c0003	450	7	7	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	c0004	450	1	0	1	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72D_chr1_145090974_145117696	0/0	c0001	450	299	64	66	124	14	31	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	c0002	450	13	0	0	13	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	c0003	450	2	0	0	0	0	2	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	c0004	450	2	0	1	0	0	1	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	c0005	450	2	2	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	c0006	450	1	0	1	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	c0007	450	1	0	0	1	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM76A_chr1_27720961_27768116	1/1	c0001	924	154	33	30	64	4	21	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	c0002	924	105	54	8	36	0	7	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	c0003	924	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	c0004	924	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	c0005	924	1	0	0	1	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	c0006	924	1	0	0	1	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	c0007	924	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76B_chr11_95763953_95794782	0/1	c0001	1020	243	91	36	79	9	27	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	1/0	c0002	1020	166	5	39	97	5	19	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	c0003	1020	3	3	0	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	c0004	1020	2	0	0	2	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	c0005	1020	2	1	1	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM78A_chr9_131253078_131281510	0/0	c0001	852	335	63	67	154	12	39	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	1/0	c0002	852	32	25	1	4	0	1	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/1	c0003	852	26	3	9	1	4	8	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	c0004	852	14	0	0	14	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	c0005	852	2	0	0	0	0	2	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	c0006	852	2	2	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	c0007	852	2	2	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	c0008	852	1	1	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	c0009	852	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510