JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM78A_chr9_131253078_131281510	0/0	c0010	852	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	c0011	852	1	0	1	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	c0012	852	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78B_chr1_166064299_166172001	1/1	c0001	786	241	70	45	97	7	20	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	c0002	786	77	12	23	33	1	8	copy fasta	FAM78B	chr1	166064299	166172001
FAM81A_chr15_59433186_59528555	0/1	c0001	1107	284	51	58	135	8	31	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	1/0	c0002	1107	81	34	7	27	4	8	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	c0003	1107	4	4	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	c0004	1107	1	0	0	0	1	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	c0005	1107	1	1	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	c0006	1107	1	0	0	0	0	1	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	c0007	1107	1	0	1	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	c0008	1107	1	0	0	0	1	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81B_chr5_95386366_95455441	1/1	c0001	1359	255	63	48	101	8	33	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	c0002	1359	75	25	18	22	3	7	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	c0003	1359	6	0	3	0	1	2	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	c0004	1359	2	0	2	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	c0005	1359	2	0	2	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	c0006	1359	2	0	2	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	c0007	1359	2	0	0	2	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	c0008	1359	1	0	1	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	c0009	1359	1	0	0	1	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	c0010	1359	1	1	0	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	c0011	1359	1	1	0	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM83A_chr8_123177665_123215078	1/1	c0001	1305	288	82	52	107	7	38	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	c0002	1305	73	2	17	41	7	6	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	c0003	1305	2	2	0	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	c0004	1305	2	2	0	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	c0005	1305	1	0	0	0	0	1	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	c0006	1305	1	0	0	1	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	c0007	1305	1	0	0	0	0	1	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	c0008	1305	1	0	1	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	c0009	1305	1	0	0	1	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83B_chr6_54841771_54950099	1/0	c0001	3036	92	10	23	41	2	15	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/1	c0002	3036	66	6	20	26	1	12	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0003	3036	23	13	6	0	1	3	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0004	3036	13	8	0	4	0	1	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0005	3036	10	9	0	1	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0006	3036	9	9	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0007	3036	9	9	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0008	3036	8	0	0	7	0	1	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0009	3036	6	3	3	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0010	3036	5	2	2	0	1	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0011	3036	4	4	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0012	3036	3	2	0	0	0	1	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0013	3036	3	0	0	3	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0014	3036	3	3	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0015	3036	2	2	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0016	3036	2	2	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0017	3036	2	2	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099