JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM83B_chr6_54841771_54950099	0/0	c0018	3036	2	0	1	0	0	1	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0019	3036	1	0	0	1	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0020	3036	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0021	3036	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0022	3036	1	0	0	1	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0023	3036	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0024	3036	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0025	3036	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0026	3036	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0027	3036	1	0	1	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	c0028	3036	1	0	0	0	1	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83C_chr20_35280731_35297425	1/1	c0001	2244	224	18	53	119	9	23	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0002	2244	101	26	13	35	9	18	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0003	2244	29	29	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0004	2244	7	5	2	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0005	2244	6	0	0	6	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0006	2244	4	0	0	4	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0007	2244	2	1	1	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0008	2244	2	2	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0009	2244	2	0	0	2	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0010	2244	2	2	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0011	2244	2	2	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0012	2244	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0013	2244	1	0	0	0	0	1	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0014	2244	1	0	1	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0015	2244	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0016	2244	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0017	2244	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0018	2244	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0019	2244	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0020	2244	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0021	2244	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0022	2244	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0023	2244	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0024	2244	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0025	2244	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0026	2244	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0027	2244	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	c0028	2244	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83D_chr20_38921417_38958106	1/0	c0001	1758	156	25	28	83	3	16	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/1	c0002	1758	131	27	24	66	3	10	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0003	1758	7	7	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0004	1758	7	7	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0005	1755	6	5	1	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0006	1758	5	2	1	1	0	1	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0007	1761	4	0	3	0	0	1	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0008	1755	3	3	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0009	1764	3	1	0	2	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0010	1761	2	2	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0011	1758	2	2	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106