JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM83D_chr20_38921417_38958106	0/0	c0012	1758	2	0	0	2	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0013	1758	2	0	0	2	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0014	1758	2	2	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0015	1758	1	1	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0016	1768	1	0	0	1	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0017	1758	1	0	1	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0018	1758	1	1	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0019	1758	1	0	0	1	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0020	1758	1	1	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0021	1761	1	1	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0022	1758	1	0	0	1	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0023	1758	1	0	0	1	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	c0024	1758	1	1	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83E_chr19_48594961_48620076	0/0	c0001	1437	97	22	24	29	8	14	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/1	c0002	1437	84	10	12	52	1	8	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0003	1437	78	23	22	31	0	2	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0004	1437	68	20	3	33	3	9	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	1/0	c0005	1437	26	1	11	0	4	9	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0006	1437	13	0	0	13	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0007	1437	9	7	2	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0008	1437	7	0	0	7	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0009	1437	7	7	0	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0010	1437	5	0	0	1	0	4	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0011	1437	2	2	0	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0012	1437	2	2	0	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0013	1437	2	2	0	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0014	1437	1	0	1	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0015	1437	1	1	0	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0016	1437	1	0	1	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0017	1437	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0018	1437	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0019	1437	1	1	0	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0020	1437	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0021	1437	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0022	1437	1	0	1	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0023	1437	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0024	1437	1	0	0	0	0	1	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0025	1450	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0026	1437	1	0	0	0	0	1	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	c0027	1437	1	0	1	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83F_chr22_39989954_40048534	1/1	c0001	1503	144	43	34	37	5	23	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0002	1503	66	27	11	10	2	16	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0003	1503	7	7	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0004	1503	6	0	2	0	1	3	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0005	1503	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0006	1503	1	0	1	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0007	1503	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0008	1503	1	0	0	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0009	1503	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0010	1503	1	0	0	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534