Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADRB1_chr10_114038866_114051904	1/0	c0002	1434	115	38	13	44	4	15	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0003	1434	77	18	22	31	1	5	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0004	1434	5	5	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0005	1434	3	3	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0006	1434	2	0	0	2	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0007	1434	2	2	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0008	1434	2	1	1	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0009	1434	1	1	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0010	1434	1	0	0	0	0	1	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0011	1434	1	1	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0012	1434	1	0	0	1	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0013	1434	1	0	1	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	c0014	1434	1	0	0	0	0	1	copy fasta	ADRB1	chr10	114038866	114051904
ADRB2_chr5_148821611_148833623	0/0	c0001	1242	146	24	19	86	1	16	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0002	1242	111	22	21	52	2	14	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	1/1	c0003	1242	71	15	25	15	8	6	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0004	1242	56	21	2	28	0	5	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0005	1242	30	2	2	21	3	2	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0006	1242	6	1	3	0	0	2	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0007	1242	6	1	0	5	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0008	1242	5	5	0	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0009	1242	4	4	0	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0010	1242	4	0	4	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0011	1242	2	1	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0012	1242	2	0	0	0	2	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0013	1242	2	0	1	0	1	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0014	1242	1	0	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0015	1242	1	0	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0016	1242	1	0	0	0	1	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0017	1242	1	1	0	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0018	1242	1	0	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0019	1242	1	1	0	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0020	1242	1	0	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0021	1242	1	0	0	0	0	1	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	c0022	1242	1	0	1	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB3_chr8_37957990_37971599	1/1	c0001	1227	274	60	50	123	6	33	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0002	1227	51	8	6	28	0	9	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0003	1227	9	0	2	7	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0004	1227	8	8	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0005	1227	3	0	0	3	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0006	1227	3	3	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0007	1227	2	0	0	2	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0008	1227	1	0	0	1	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0009	1227	1	0	0	0	1	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0010	1227	1	1	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0011	1227	1	0	0	1	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0012	1227	1	1	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0013	1227	1	1	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0014	1227	1	0	0	0	1	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0015	1227	1	1	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599