JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM83F_chr22_39989954_40048534	0/0	c0011	1503	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0012	1503	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0013	1503	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0014	1503	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	c0015	1503	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83G_chr17_18963789_19009764	0/1	c0001	2475	146	29	35	48	9	24	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	1/0	c0002	2472	88	23	19	33	4	8	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0003	2475	63	18	7	29	1	8	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0004	2472	28	2	1	21	0	4	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0005	2475	17	0	0	17	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0006	2472	5	4	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0007	2475	4	0	0	4	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0008	2472	4	0	0	4	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0009	2472	3	3	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0010	2472	2	0	0	2	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0011	2475	2	1	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0012	2472	2	2	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0013	2475	1	0	0	0	0	1	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0014	2475	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0015	2475	1	0	0	0	0	1	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0016	2475	1	1	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0017	2475	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0018	2475	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0019	2475	1	1	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0020	2472	1	0	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0021	2475	1	1	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0022	2475	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0023	2475	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0024	2475	1	1	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0025	2475	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	c0026	2472	1	0	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83H_chr8_143718933_143738779	0/0	c0001	3540	103	6	19	65	3	10	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0002	3540	85	17	25	24	5	14	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0003	3540	63	1	9	37	2	14	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0004	3540	45	40	5	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/1	c0005	3540	16	1	2	12	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0006	3540	15	0	1	12	1	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0007	3540	9	6	1	0	0	2	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0008	3540	6	6	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0009	3540	5	0	0	5	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0010	3540	5	5	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0011	3540	4	0	1	0	2	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0012	3540	4	0	3	0	0	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0013	3540	2	0	0	0	0	2	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0014	3540	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0015	3540	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0016	3540	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0017	3540	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0018	3540	2	0	1	0	0	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0019	3540	2	0	0	0	0	2	copy fasta	FAM83H	chr8	143718933	143738779