JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM83H_chr8_143718933_143738779	0/0	c0020	3540	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0021	3540	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0022	3540	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0023	3540	1	0	0	0	0	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0024	3540	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0025	3540	1	0	0	0	1	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0026	3540	1	0	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0027	3540	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0028	3540	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0029	3540	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0030	3540	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0031	3540	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0032	3540	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0033	3540	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0034	3540	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0035	3540	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0036	3540	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0037	3540	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0038	3540	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0039	3540	1	0	0	0	0	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0040	3540	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0041	3540	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	c0042	3540	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM86B1_chr8_12177106_12199082	1/1	c0001	891	49	4	7	32	0	4	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0002	891	31	0	7	20	2	2	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0003	891	19	0	4	14	0	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0004	891	17	0	7	8	1	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0005	891	12	0	2	9	1	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0006	891	6	0	3	3	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0007	891	4	4	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0008	891	4	0	2	0	1	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0009	891	3	3	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0010	891	3	0	0	3	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0011	891	2	0	2	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0012	891	2	1	0	0	0	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0013	891	2	2	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0014	891	2	0	0	0	2	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0015	891	2	0	0	0	1	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0016	891	2	2	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0017	891	2	0	0	1	0	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0018	891	2	2	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0019	891	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0020	891	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0021	891	1	0	1	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0022	891	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0023	891	1	0	1	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0024	891	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0025	891	1	0	1	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0026	891	1	0	0	1	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0027	891	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082