JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM86B1_chr8_12177106_12199082	0/0	c0028	891	1	0	0	1	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0029	891	1	0	1	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	c0030	891	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B2_chr8_12419421_12441400	0/0	c0001	993	10	0	0	10	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0002	993	6	5	0	1	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0003	993	3	3	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0004	993	3	3	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0005	993	3	0	3	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0006	993	2	0	0	1	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0007	993	2	0	1	0	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0008	993	2	2	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0009	993	2	0	1	0	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0010	993	2	0	0	0	1	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0011	993	2	1	0	0	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0012	993	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0013	993	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0014	993	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0015	993	1	0	0	0	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0016	993	1	0	0	0	1	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0017	993	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0018	993	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0019	993	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0020	993	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0021	993	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0022	993	1	0	1	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0023	993	1	0	1	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	c0024	993	1	0	1	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM89A_chr1_231013958_231045254	1/1	c0001	555	449	93	76	214	18	46	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	0/0	c0002	555	1	1	0	0	0	0	copy fasta	FAM89A	chr1	231013958	231045254
FAM89B_chr11_65567538_65579190	0/0	c0001	570	364	96	66	146	16	40	copy fasta	FAM89B	chr11	65567538	65579190
FAM89B_chr11_65567538_65579190	0/0	c0002	570	2	0	0	2	0	0	copy fasta	FAM89B	chr11	65567538	65579190
FAM8A1_chr6_17595302_17616715	1/1	c0001	1242	361	83	56	166	16	38	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	c0002	1230	4	0	0	4	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	c0003	1224	3	3	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	c0004	1242	2	0	0	0	1	1	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	c0005	1242	1	0	0	0	1	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	c0006	1242	1	0	0	0	0	1	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	c0007	1242	1	0	0	1	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	c0008	1242	1	0	0	1	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM90A10_chr8_7763977_7776988	1/0	c0001	1395	21	1	7	7	2	3	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	c0002	1395	18	0	3	10	2	3	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	c0003	1395	17	0	3	11	1	2	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	c0004	1395	10	1	4	4	1	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	c0005	1395	7	0	2	1	2	2	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	c0006	1395	4	0	1	0	1	2	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	c0007	1395	2	0	0	2	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	c0008	1395	2	0	0	2	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	c0009	1395	2	2	0	0	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	c0010	1395	2	0	1	1	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	c0011	1395	2	2	0	0	0	0	copy fasta	FAM90A10	chr8	7763977	7776988