JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM90A19_chr8_7748682_7761692	0/0	c0031	1395	1	0	1	0	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0032	1395	1	0	1	0	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0033	1395	1	0	0	0	0	1	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0034	1395	1	0	0	1	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0035	1395	1	0	0	1	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0036	1395	1	0	1	0	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0037	1395	1	0	0	1	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0038	1395	1	0	0	0	0	1	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0039	1395	1	1	0	0	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0040	1395	1	0	0	0	0	1	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0041	1395	1	0	0	0	0	1	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0042	1395	1	1	0	0	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0043	1395	1	0	0	1	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0044	1395	1	0	0	1	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0045	1395	1	0	0	1	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0046	1395	1	1	0	0	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0047	1395	1	0	0	1	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0048	1395	1	0	0	0	1	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	c0049	1395	1	0	0	1	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A1_chr12_8216260_8232618	0/0	c0001	1398	197	6	44	115	11	21	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0002	1395	119	2	13	90	1	13	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0003	1395	89	55	23	3	2	6	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0004	1395	9	9	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0005	1395	5	5	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0006	1395	4	4	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0007	1395	4	4	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0008	1395	4	3	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0009	1398	2	0	0	2	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	1/0	c0010	1395	2	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0011	1395	2	2	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/1	c0012	1395	2	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0013	1398	2	0	0	2	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0014	1398	2	0	0	2	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0015	1395	1	0	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0016	30842	1	0	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0017	1395	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0018	1395	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0019	1398	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0020	1395	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0021	1395	1	0	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0022	1395	1	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0023	1398	1	0	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0024	1395	1	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0025	1395	1	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0026	1395	1	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0027	1398	1	0	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0028	1398	1	0	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0029	30846	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0030	1398	1	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0031	1395	1	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618