JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
FAM90A1_chr12_8216260_8232618	0/0	c0032	1395	1	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0033	1398	1	0	0	1	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0034	1395	1	0	0	1	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0035	1395	1	0	0	1	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0036	1395	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	c0037	1395	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A22_chr8_7566995_7580006	0/0	c0001	1395	9	0	1	8	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0002	1395	9	3	2	2	2	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0003	1395	6	0	0	4	2	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0004	1395	5	1	2	1	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0005	1395	4	0	1	3	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0006	1395	3	0	0	2	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0007	1395	3	0	1	1	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0008	1395	3	1	0	1	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0009	1395	3	0	2	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0010	1395	2	0	0	1	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0011	1395	2	0	0	2	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0012	1395	2	0	0	2	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0013	1395	2	0	2	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0014	1395	2	2	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0015	1029	2	0	1	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0016	1395	2	2	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0017	1395	1	1	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0018	1395	1	0	0	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0019	1029	1	0	0	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0020	1395	1	0	0	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0021	1395	1	0	0	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0022	1395	1	0	0	0	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0023	1395	1	0	0	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0024	1395	1	0	0	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0025	1395	1	0	0	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0026	1395	1	0	0	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0027	1029	1	0	0	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0028	13016	1	0	0	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0029	1395	1	0	1	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0030	1395	1	0	0	0	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0031	1395	1	0	0	0	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0032	1395	1	0	1	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0033	1395	1	0	0	1	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0034	1395	1	1	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0035	1395	1	0	1	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0036	1395	1	1	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0037	1395	1	1	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0038	1395	1	1	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0039	1395	1	1	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0040	1395	1	0	0	0	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0041	1395	1	0	0	0	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0042	1395	1	1	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0043	1395	1	1	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	c0044	1395	1	1	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006