Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADRB3_chr8_37957990_37971599	0/0	c0016	1227	1	0	0	1	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0017	1227	1	0	0	1	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0018	1227	1	0	0	1	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	c0019	1227	1	1	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRM1_chr20_62297997_62313862	0/1	c0001	1224	288	49	60	127	17	34	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0002	1224	38	26	8	2	0	2	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0003	1224	10	0	1	7	0	2	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	1/0	c0004	1224	7	5	1	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0005	1224	6	0	5	1	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0006	1224	3	2	0	0	0	1	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0007	1224	2	2	0	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0008	1224	2	0	1	0	1	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0009	1224	2	2	0	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0010	1224	2	2	0	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0011	1224	1	0	0	1	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0012	1224	1	0	0	1	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0013	1224	1	1	0	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0014	1224	1	0	0	0	0	1	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0015	1224	1	0	0	1	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0016	1224	1	1	0	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0017	1224	1	1	0	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	c0018	1224	1	1	0	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADSL_chr22_40341500_40374367	1/1	c0001	1455	296	82	54	122	6	30	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	c0002	1455	6	6	0	0	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSS1_chr14_104719229_104752310	1/1	c0001	1374	255	71	45	98	16	23	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	c0002	1374	107	6	18	73	0	10	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	c0003	1374	26	9	13	1	0	3	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	c0004	1374	3	0	0	2	0	1	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	c0005	1374	2	2	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	c0006	1374	2	2	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	c0007	1374	2	2	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	c0008	1374	1	1	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	c0009	1374	1	0	0	1	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	c0010	1374	1	0	0	0	0	1	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	c0011	1374	1	0	0	1	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	c0012	1374	1	1	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS2_chr1_244403494_244456909	1/1	c0001	1371	406	94	77	182	12	39	copy fasta	ADSS2	chr1	244403494	244456909
ADSS2_chr1_244403494_244456909	0/0	c0002	1371	2	0	1	0	0	1	copy fasta	ADSS2	chr1	244403494	244456909
ADTRP_chr6_11708523_11783803	1/1	c0001	693	321	74	75	115	11	44	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	c0002	693	76	8	2	62	1	3	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	c0003	693	8	6	2	0	0	0	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	c0004	693	3	0	0	3	0	0	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	c0005	693	1	0	0	0	0	1	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	c0006	693	1	0	1	0	0	0	copy fasta	ADTRP	chr6	11708523	11783803
AEBP1_chr7_44099345_44119560	0/0	c0001	3477	117	35	16	59	4	3	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0002	3477	99	19	15	45	3	17	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/1	c0003	3477	66	6	14	36	6	3	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	1/0	c0004	3477	48	0	7	28	4	8	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0005	3477	24	11	9	0	0	4	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0006	3477	16	1	0	10	0	5	copy fasta	AEBP1	chr7	44099345	44119560