JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM90A9_chr8_7756330_7769340	0/0	c0036	1395	1	1	0	0	0	0	copy fasta	FAM90A9	chr8	7756330	7769340
FAM91A1_chr8_123763439_123820452	0/1	c0001	2517	281	55	49	131	10	35	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0002	2517	32	17	4	11	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0003	2517	4	4	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0004	2517	3	0	1	0	0	2	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0005	2517	2	2	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0006	2517	2	0	0	0	0	2	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0007	2517	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0008	2517	1	0	0	1	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0009	2517	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0010	2517	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0011	2517	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0012	2517	1	0	0	0	0	1	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0013	2517	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0014	2517	1	0	0	1	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	1/0	c0015	2517	1	0	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0016	2517	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0017	2517	1	0	0	0	0	1	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0018	2517	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0019	2517	1	0	0	0	0	1	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	c0020	2517	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM98A_chr2_33578660_33604299	1/1	c0001	1557	385	79	75	172	13	44	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	c0002	1557	10	10	0	0	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	c0003	1557	2	2	0	0	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	c0004	1557	2	0	1	0	1	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	c0005	1557	1	0	0	0	1	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	c0006	1557	1	0	0	1	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	c0007	1557	1	0	0	1	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	c0008	1557	1	0	0	0	1	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	c0009	1557	1	0	0	1	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	c0010	1557	1	1	0	0	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	c0011	1557	1	0	0	1	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98B_chr15_38449127_38492710	1/1	c0001	1302	337	71	56	158	18	32	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0002	1293	29	3	9	15	0	2	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0003	1302	12	8	3	0	0	1	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0004	1302	7	7	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0005	1284	4	0	0	1	0	3	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0006	1302	3	0	2	0	0	1	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0007	1293	1	0	0	0	0	1	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0008	1302	1	0	0	0	0	1	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0009	1302	1	0	0	0	0	1	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0010	1302	1	0	1	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0011	1275	1	0	1	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0012	1302	1	1	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0013	1302	1	0	0	1	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	c0014	1302	1	0	0	1	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98C_chr19_38398093_38414084	1/1	c0001	1050	225	59	43	85	11	25	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0002	1050	56	1	9	38	1	7	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0003	1053	50	0	5	45	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0004	1053	21	6	0	15	0	0	copy fasta	FAM98C	chr19	38398093	38414084