JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM98C_chr19_38398093_38414084	0/0	c0005	1050	5	2	2	0	0	1	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0006	1053	4	4	0	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0007	1053	4	4	0	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0008	1047	3	0	0	2	0	1	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0009	1053	2	2	0	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0010	1050	2	2	0	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0011	1050	1	0	1	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0012	1053	1	0	0	1	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0013	1050	1	0	0	1	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0014	1050	1	0	0	1	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0015	1050	1	0	1	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0016	1050	1	0	1	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0017	1050	1	0	0	1	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	c0018	1050	1	0	0	1	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM9A_chrX_8785795_8806383	1/1	c0001	999	268	58	49	124	11	24	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0002	999	7	4	1	0	2	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0003	999	7	6	1	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0004	996	3	0	0	2	0	1	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0005	996	3	0	3	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0006	999	2	0	0	0	0	2	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0007	996	2	0	2	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0008	999	2	0	0	2	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0009	981	2	0	0	2	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0010	908	2	0	0	1	0	1	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0011	999	1	1	0	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0012	998	1	0	1	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0013	997	1	0	0	1	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0014	1002	1	0	0	1	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	c0015	999	1	1	0	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9B_chrX_9019232_9039127	1/1	c0001	561	255	60	45	112	9	27	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	c0002	558	2	0	0	1	0	1	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	c0003	569	1	0	0	1	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9C_chrX_13030617_13049620	1/1	c0001	501	309	69	54	143	13	28	copy fasta	FAM9C	chrX	13030617	13049620
FAM9C_chrX_13030617_13049620	0/0	c0002	501	2	0	0	2	0	0	copy fasta	FAM9C	chrX	13030617	13049620
FAM9C_chrX_13030617_13049620	0/0	c0003	501	2	0	0	2	0	0	copy fasta	FAM9C	chrX	13030617	13049620
FAM9C_chrX_13030617_13049620	0/0	c0004	501	1	1	0	0	0	0	copy fasta	FAM9C	chrX	13030617	13049620
FAM9C_chrX_13030617_13049620	0/0	c0005	501	1	0	0	1	0	0	copy fasta	FAM9C	chrX	13030617	13049620
FAN1_chr15_30898915_30948108	0/1	c0001	3054	149	57	35	33	5	18	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0002	3054	94	4	17	47	6	20	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0003	3054	25	9	3	13	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0004	3054	10	9	1	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0005	3054	7	7	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0006	3054	3	0	0	3	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0007	3054	3	3	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0008	3054	2	2	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0009	3054	2	0	0	0	2	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0010	3054	1	1	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0011	3054	1	0	1	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0012	3054	1	1	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0013	3054	1	0	0	0	1	0	copy fasta	FAN1	chr15	30898915	30948108