JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAN1_chr15_30898915_30948108	0/0	c0014	3054	1	0	0	0	0	1	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0015	3054	1	0	1	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0016	3054	1	1	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	c0017	3054	1	0	0	0	0	1	copy fasta	FAN1	chr15	30898915	30948108
FANCA_chr16_89732549_89821647	0/0	c0001	4368	93	25	17	42	2	7	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/1	c0002	4368	56	9	9	26	2	9	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0003	4368	31	9	10	2	2	8	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	1/0	c0004	4368	28	3	18	0	3	3	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0005	4368	21	0	0	19	0	2	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0006	4368	13	1	1	5	0	6	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0007	4368	10	8	2	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0008	4368	7	0	1	5	1	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0009	4368	7	7	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0010	4368	6	0	3	0	2	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0011	4368	4	0	2	0	1	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0012	4368	3	0	3	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0013	4368	3	3	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0014	4368	3	3	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0015	4368	2	0	1	0	1	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0016	4368	2	2	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0017	4368	2	2	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0018	4368	2	2	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0019	4368	2	0	0	2	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0020	4368	2	2	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0021	4368	1	0	0	0	0	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0022	4368	1	0	1	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0023	4368	1	0	1	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0024	4368	1	0	0	0	0	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0025	4367	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0026	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0027	4368	1	0	0	0	0	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0028	4368	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0029	4368	1	0	0	0	0	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0030	4368	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0031	4368	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0032	4368	1	0	0	0	0	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0033	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0034	4368	1	0	0	0	0	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0035	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0036	4368	1	0	1	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0037	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0038	4368	1	0	0	0	0	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0039	4368	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0040	4368	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0041	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0042	4368	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0043	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0044	4368	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0045	4368	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0046	4368	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647