JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FANCA_chr16_89732549_89821647	0/0	c0047	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0048	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0049	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0050	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0051	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0052	4368	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0053	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0054	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0055	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0056	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	c0057	4368	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCB_chrX_14838405_14878069	1/1	c0001	2580	259	75	47	102	7	26	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	c0002	2580	7	0	5	0	2	0	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	c0003	2580	2	2	0	0	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	c0004	2580	2	0	2	0	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	c0005	2580	2	0	0	0	0	2	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	c0006	2579	1	0	0	1	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	c0007	2580	1	1	0	0	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCC_chr9_95094054_95322709	1/1	c0001	1677	252	56	50	96	12	36	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	c0002	1677	8	8	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	c0003	1677	5	3	2	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	c0004	1677	3	3	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	c0005	1677	3	3	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	c0006	1677	2	0	0	2	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	c0007	1677	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	c0008	1677	1	0	1	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	c0009	1677	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	c0010	1677	1	0	1	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	c0011	1677	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCD2OS_chr3_10098937_10113255	1/1	c0001	534	309	60	59	130	16	42	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	c0002	534	20	17	3	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	c0003	534	13	13	0	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	c0004	534	1	0	1	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	c0005	534	1	1	0	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	c0006	534	1	0	1	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	c0007	534	1	1	0	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2_chr3_10021437_10106932	1/1	c0001	4356	128	27	32	40	6	21	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0002	4356	56	30	10	11	1	4	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0003	4356	12	9	3	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0004	4356	9	9	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0005	4356	7	1	2	3	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0006	4356	4	2	1	0	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0007	4356	3	3	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0008	4356	3	0	0	2	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0009	4356	2	0	1	0	1	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0010	4356	2	2	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0011	4356	2	2	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0012	4356	2	0	2	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0013	4356	2	0	0	0	0	2	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0014	4356	1	1	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932