JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FANCD2_chr3_10021437_10106932	0/0	c0015	4356	1	1	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0016	4356	1	1	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0017	4356	1	0	0	0	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0018	4356	1	0	0	1	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0019	4356	1	0	1	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0020	4356	1	0	1	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0021	4356	1	0	1	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0022	4356	1	0	0	1	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	c0023	4356	1	0	0	0	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCE_chr6_35447338_35472102	0/0	c0001	1611	186	45	40	76	7	18	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	1/0	c0002	1611	91	7	19	49	2	13	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	c0003	1611	54	22	5	18	2	7	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	c0004	1611	37	0	1	32	1	3	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	c0005	1611	13	12	1	0	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	c0006	1611	5	0	0	5	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	c0007	1611	5	0	0	5	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	c0008	1611	4	0	0	4	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/1	c0009	1611	2	0	1	0	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	c0010	1611	1	0	0	0	0	1	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	c0011	1611	1	0	1	0	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	c0012	1611	1	0	0	1	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	c0013	1611	1	0	0	0	0	1	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	c0014	1611	1	0	0	0	0	1	copy fasta	FANCE	chr6	35447338	35472102
FANCF_chr11_22617533_22630823	1/1	c0001	1125	376	93	64	172	11	34	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	c0002	1125	16	0	4	12	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	c0003	1125	12	0	0	11	0	1	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	c0004	1125	5	0	5	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	c0005	1125	2	0	0	0	0	2	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	c0006	1125	2	0	2	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	c0007	1125	2	2	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	c0008	1125	1	0	0	0	1	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	c0009	1125	1	0	1	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	c0010	1125	1	0	0	1	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	c0011	1125	1	1	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	c0012	1125	1	0	0	0	0	1	copy fasta	FANCF	chr11	22617533	22630823
FANCG_chr9_35068839_35084942	1/1	c0001	1869	366	73	66	164	16	45	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0002	1869	40	11	3	24	0	2	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0003	1869	8	8	0	0	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0004	1869	2	2	0	0	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0005	1869	1	0	0	1	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0006	1869	1	0	1	0	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0007	1869	1	0	0	1	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0008	1869	1	1	0	0	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0009	1869	1	0	0	1	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0010	1869	1	1	0	0	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0011	1869	1	1	0	0	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0012	1869	1	1	0	0	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0013	1869	1	0	0	1	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	c0014	1869	1	0	0	0	0	1	copy fasta	FANCG	chr9	35068839	35084942
FANCI_chr15_89238979_89322131	1/1	c0001	3987	141	28	23	67	8	13	copy fasta	FANCI	chr15	89238979	89322131