JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FANCI_chr15_89238979_89322131	0/0	c0002	3987	64	5	14	34	3	8	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0003	3987	44	23	1	20	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0004	3987	16	12	4	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0005	3987	16	2	6	0	4	4	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0006	3987	15	0	0	15	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0007	3987	8	0	3	2	0	3	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0008	3987	7	7	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0009	3987	4	4	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0010	3987	3	3	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0011	3987	2	0	0	0	0	2	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0012	3987	2	2	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0013	3987	2	0	0	2	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0014	3987	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0015	3987	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0016	3987	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0017	3987	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0018	3987	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0019	3987	1	0	1	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0020	3987	1	0	1	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0021	3987	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0022	3987	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0023	3987	1	0	0	0	0	1	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0024	3987	1	0	1	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0025	3987	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0026	3987	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0027	3987	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0028	3987	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0029	3987	1	0	0	0	1	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0030	3987	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0031	3987	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0032	3987	1	0	1	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0033	3987	1	0	1	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0034	3987	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	c0035	3987	1	0	0	0	0	1	copy fasta	FANCI	chr15	89238979	89322131
FANCL_chr2_58154247_58246325	0/0	c0001	1128	277	81	44	119	8	25	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	1/1	c0002	1128	105	6	24	61	2	10	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	c0003	1128	1	1	0	0	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	c0004	1128	1	0	0	1	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	c0005	1128	1	0	0	0	0	1	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	c0006	1128	1	0	0	1	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	c0007	1128	1	0	1	0	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	c0008	1128	1	0	0	0	1	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	c0009	1128	1	0	1	0	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	c0010	1128	1	0	0	0	1	0	copy fasta	FANCL	chr2	58154247	58246325
FANCM_chr14_45130930_45205890	1/0	c0001	6147	113	24	22	42	5	19	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0002	6147	29	0	1	23	3	2	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0003	6147	14	12	2	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0004	6147	10	1	6	2	0	1	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0005	6147	10	9	0	1	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0006	6147	9	9	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890