JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FANCM_chr14_45130930_45205890	0/0	c0007	6147	6	6	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0008	6147	6	6	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0009	6147	5	0	1	4	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0010	6147	5	2	1	0	1	1	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0011	6147	3	3	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0012	6147	2	2	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0013	6147	2	0	0	2	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0014	6147	2	2	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0015	6147	2	2	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0016	6147	2	2	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0017	6147	1	0	1	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0018	6147	1	0	0	1	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0019	6147	1	0	0	0	0	1	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0020	6147	1	0	0	0	1	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/1	c0021	6147	1	0	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0022	6147	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0023	6147	1	0	0	0	0	1	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0024	6147	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0025	6147	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0026	6147	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0027	6147	1	0	1	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0028	6147	1	0	1	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0029	6147	1	0	0	1	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0030	6147	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0031	6147	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0032	6147	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0033	6147	1	0	0	0	0	1	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	c0034	6147	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANK1_chr10_125891564_126014592	1/1	c0001	1038	351	77	53	168	10	41	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	c0002	1038	7	0	7	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	c0003	1038	3	3	0	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	c0004	1038	2	2	0	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	c0005	1038	1	0	1	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	c0006	1038	1	1	0	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	c0007	1038	1	1	0	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	c0008	1038	1	0	0	0	0	1	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	c0009	1038	1	0	1	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	c0010	1038	1	0	0	1	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	c0011	1038	1	0	0	1	0	0	copy fasta	FANK1	chr10	125891564	126014592
FAP_chr2_162165684_162248445	1/1	c0001	2283	182	63	34	59	7	17	copy fasta	FAP	chr2	162165684	162248445
FAP_chr2_162165684_162248445	0/0	c0002	2283	36	0	14	21	0	1	copy fasta	FAP	chr2	162165684	162248445
FAP_chr2_162165684_162248445	0/0	c0003	2283	5	5	0	0	0	0	copy fasta	FAP	chr2	162165684	162248445
FAP_chr2_162165684_162248445	0/0	c0004	2283	3	0	0	2	1	0	copy fasta	FAP	chr2	162165684	162248445
FAP_chr2_162165684_162248445	0/0	c0005	2283	3	3	0	0	0	0	copy fasta	FAP	chr2	162165684	162248445
FAP_chr2_162165684_162248445	0/0	c0006	2283	2	2	0	0	0	0	copy fasta	FAP	chr2	162165684	162248445
FAP_chr2_162165684_162248445	0/0	c0007	2283	2	0	2	0	0	0	copy fasta	FAP	chr2	162165684	162248445
FAP_chr2_162165684_162248445	0/0	c0008	2283	1	1	0	0	0	0	copy fasta	FAP	chr2	162165684	162248445
FAR1_chr11_13663668_13737346	1/1	c0001	1548	345	90	59	137	16	41	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	c0002	1548	2	0	0	0	0	2	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	c0003	1548	1	0	1	0	0	0	copy fasta	FAR1	chr11	13663668	13737346