JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAR1_chr11_13663668_13737346	0/0	c0004	1548	1	0	0	1	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	c0005	1548	1	0	0	0	0	1	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	c0006	1548	1	0	0	1	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	c0007	1548	1	0	0	1	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR2_chr12_29144278_29340616	1/1	c0001	1548	183	28	38	93	5	17	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	c0002	1548	132	42	20	48	3	19	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	c0003	1548	7	7	0	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	c0004	1548	1	1	0	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	c0005	1548	1	1	0	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	c0006	1548	1	1	0	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	c0007	1548	1	0	0	1	0	0	copy fasta	FAR2	chr12	29144278	29340616
FARP1_chr13_98138094_98460176	0/1	c0001	3138	101	32	21	28	2	17	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	1/0	c0002	3138	90	36	17	17	5	14	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0003	3138	5	5	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0004	3138	4	0	2	0	1	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0005	3138	2	0	0	2	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0006	3138	2	0	0	2	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0007	3138	2	2	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0008	3138	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0009	3138	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0010	3138	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0011	3138	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0012	3138	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0013	3138	1	0	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0014	3138	1	0	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0015	3138	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0016	3138	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0017	3138	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0018	3138	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	c0019	3138	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP2_chr2_241351285_241499841	1/0	c0001	3165	186	28	24	104	4	25	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0002	3165	34	0	13	21	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0003	3165	34	3	5	21	1	4	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0004	3165	30	14	11	0	3	2	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0005	3165	28	10	5	6	1	6	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0006	3165	13	0	1	8	0	4	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0007	3165	11	9	2	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0008	3165	8	8	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0009	3165	5	0	5	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0010	3165	3	0	3	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0011	3165	2	2	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0012	3165	2	2	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0013	3165	2	1	0	0	0	1	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0014	3165	2	2	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0015	3165	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0016	3165	1	0	0	0	1	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0017	3165	1	0	1	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0018	3165	1	0	0	1	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0019	3165	1	0	0	1	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0020	3165	1	0	0	0	1	0	copy fasta	FARP2	chr2	241351285	241499841