Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AEBP1_chr7_44099345_44119560	0/0	c0007	3477	15	13	2	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0008	3477	12	0	0	10	0	2	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0009	3477	6	6	0	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0010	3477	3	0	3	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0011	3477	3	0	0	0	1	2	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0012	3477	2	0	2	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0013	3477	2	0	0	2	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0014	3477	2	0	2	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0015	3477	1	0	0	1	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0016	3492	1	0	0	1	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0017	3477	1	0	0	1	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0018	3453	1	0	0	0	0	1	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0019	3477	1	0	0	1	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0020	3477	1	0	0	1	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0021	3477	1	0	0	0	0	1	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0022	3477	1	1	0	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0023	3477	1	0	0	1	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0024	3477	1	1	0	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	c0025	3477	1	1	0	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP2_chr12_19434492_19527227	1/1	c0001	1512	343	81	69	142	10	39	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	c0002	1512	53	13	3	37	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	c0003	1512	3	2	1	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	c0004	1512	2	0	0	2	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	c0005	1512	1	0	0	0	0	1	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	c0006	1512	1	0	1	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	c0007	1488	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEN_chr15_88616340_88637281	0/0	c0001	978	171	12	36	99	5	19	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	1/0	c0002	978	117	37	16	57	0	6	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/1	c0003	978	84	9	15	47	5	7	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0004	978	27	16	4	4	2	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0005	978	14	6	3	0	1	4	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0006	978	9	9	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0007	978	3	0	1	0	1	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0008	978	2	0	0	1	0	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0009	978	2	1	1	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0010	978	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0011	978	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0012	978	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0013	978	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0014	978	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0015	978	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0016	978	1	0	0	0	0	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0017	978	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0018	978	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0019	978	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	c0020	978	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AFAP1L1_chr5_149266859_149348637	1/1	c0001	2307	255	60	53	99	9	32	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	c0002	2307	11	10	1	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	c0003	2307	5	2	3	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	c0004	2307	3	3	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637