JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FARP2_chr2_241351285_241499841	0/0	c0021	3165	1	0	0	0	1	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0022	3165	1	0	0	1	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0023	3165	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0024	3165	1	0	0	1	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0025	3165	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0026	3165	1	0	0	0	0	1	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0027	3165	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0028	3165	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0029	3165	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0030	3165	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	c0031	3165	1	0	0	0	0	1	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/1	c0032	3165	1	0	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARS2_chr6_5256513_5776583	1/1	c0001	1356	127	64	24	20	6	11	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	c0002	1356	24	2	6	12	0	4	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	c0003	1356	6	4	0	0	0	2	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	c0004	1356	5	4	1	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	c0005	1356	1	1	0	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	c0006	1356	1	0	0	0	0	1	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	c0007	1356	1	1	0	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	c0008	1356	1	1	0	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	c0009	1356	1	1	0	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	c0010	1356	1	0	1	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	c0011	1356	1	0	1	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	c0012	1356	1	0	1	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARSA_chr19_12917479_12938711	1/1	c0001	1527	294	88	60	104	16	24	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0002	1527	27	0	8	16	0	3	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0003	1527	5	0	5	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0004	1527	5	0	0	5	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0005	1527	4	4	0	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0006	1527	2	0	0	0	0	2	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0007	1527	2	2	0	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0008	1527	1	0	0	0	0	1	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0009	1527	1	0	1	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0010	1527	1	0	1	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0011	1527	1	1	0	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0012	1527	1	1	0	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0013	1527	1	0	0	1	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	c0014	1527	1	0	1	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSB_chr2_222561899_222661092	0/1	c0001	1770	283	46	50	137	12	37	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	1/0	c0002	1770	56	37	9	4	0	5	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	c0003	1770	1	1	0	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	c0004	1770	1	0	0	1	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	c0005	1770	1	0	0	0	0	1	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	c0006	1770	1	0	1	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	c0007	1770	1	0	0	0	0	1	copy fasta	FARSB	chr2	222561899	222661092
FASLG_chr1_172654103_172671876	1/1	c0001	846	403	81	75	185	18	42	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	c0002	846	20	17	3	0	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	c0003	846	1	1	0	0	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	c0004	811	1	0	0	1	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	c0005	846	1	1	0	0	0	0	copy fasta	FASLG	chr1	172654103	172671876