JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FASN_chr17_82073338_82103236	1/0	c0001	7536	81	5	11	51	3	10	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0002	7536	59	14	30	12	3	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0003	7536	37	7	9	17	0	4	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0004	7536	15	1	1	13	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0005	7536	13	3	8	0	1	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0006	7536	13	0	0	12	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0007	7536	12	1	4	0	2	5	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0008	7536	12	4	0	3	0	5	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0009	7536	11	1	0	9	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0010	7536	10	2	0	8	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0011	7536	8	2	3	2	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0012	7536	8	2	2	0	3	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0013	7536	7	6	1	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0014	7536	5	0	2	1	1	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0015	7536	4	4	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0016	7536	4	0	0	1	0	3	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/1	c0017	7536	4	0	2	0	1	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0018	7536	4	1	0	1	0	2	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0019	7536	4	4	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0020	7536	3	0	0	3	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0021	7536	3	0	1	0	1	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0022	7536	3	3	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0023	7536	3	3	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0024	7536	2	0	2	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0025	7536	2	1	1	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0026	7536	2	0	0	2	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0027	7536	2	2	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0028	7536	2	0	1	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0029	7536	2	2	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0030	7536	2	2	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0031	7536	2	2	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0032	7536	2	0	0	2	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0033	7536	2	0	0	2	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0034	7536	2	0	0	2	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0035	7536	2	2	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0036	7536	2	0	0	2	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0037	7536	1	0	0	0	1	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0038	7536	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0039	7536	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0040	7536	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0041	7536	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0042	7536	1	0	1	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0043	7536	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0044	7536	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0045	7536	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0046	7536	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0047	7536	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0048	7536	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0049	7536	1	0	1	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0050	7536	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236