JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FASTKD5_chr20_3141519_3164865	0/0	c0008	2295	2	2	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0009	2295	1	1	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0010	2295	1	1	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0011	2295	1	1	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0012	2295	1	1	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0013	2295	1	0	1	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0014	2295	1	0	0	1	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0015	2295	1	0	0	0	1	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0016	2295	1	0	0	1	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0017	2295	1	0	0	0	1	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTK_chr7_151071624_151085809	1/1	c0001	1650	349	76	59	156	18	38	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	c0002	1650	59	14	4	41	0	0	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	c0003	1650	4	4	0	0	0	0	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	c0004	1650	3	0	2	0	0	1	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	c0005	1650	1	0	0	1	0	0	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	c0006	1650	1	1	0	0	0	0	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	c0007	1650	1	0	0	0	0	1	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	c0008	1650	1	1	0	0	0	0	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	c0009	1650	1	0	1	0	0	0	copy fasta	FASTK	chr7	151071624	151085809
FAS_chr10_88985798_89022059	0/0	c0001	1008	278	50	45	142	13	28	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	1/0	c0002	1008	73	21	23	11	4	13	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/1	c0003	1008	14	1	7	2	1	2	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	c0004	1008	12	10	2	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	c0005	1008	5	0	0	5	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	c0006	1008	3	3	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	c0007	1008	3	3	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	c0008	1008	2	2	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	c0009	1008	2	2	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	c0010	1008	2	0	1	0	0	1	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	c0011	1008	1	1	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	c0012	1008	1	1	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAT1_chr4_186582794_186728856	0/1	c0001	13767	23	2	7	6	4	3	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0002	13767	17	1	1	13	0	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0003	13767	14	0	0	14	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0004	13767	9	0	2	5	1	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0005	13767	9	0	2	7	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0006	13767	7	0	3	4	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0007	13767	7	0	4	0	1	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0008	13767	7	0	3	1	2	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0009	13767	6	0	3	1	0	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0010	13767	6	1	0	4	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0011	13767	6	5	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0012	13767	5	0	1	4	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0013	13767	5	0	0	5	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0014	13767	4	0	2	1	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0015	13767	4	1	3	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0016	13767	4	0	3	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0017	13767	4	1	0	0	1	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0018	13767	4	0	0	4	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0019	13767	4	0	0	4	0	0	copy fasta	FAT1	chr4	186582794	186728856