JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAT1_chr4_186582794_186728856	0/0	c0020	13767	3	0	0	1	0	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0021	13767	3	1	2	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0022	13767	3	3	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0023	13767	3	3	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0024	13767	3	0	0	3	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0025	13767	3	0	2	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0026	13767	3	3	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0027	13767	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0028	13767	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0029	13767	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0030	13767	2	0	2	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0031	13767	2	0	2	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0032	13767	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0033	13767	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0034	13767	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0035	13767	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0036	13767	2	0	0	0	1	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0037	13767	2	0	0	1	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0038	13767	2	0	2	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0039	13767	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0040	13767	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0041	13767	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0042	13767	2	0	0	1	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0043	13767	2	0	1	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0044	13767	2	0	1	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0045	13767	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0046	13767	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0047	13767	2	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0048	13767	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0049	13767	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0050	13767	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0051	13767	2	0	0	0	2	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0052	13767	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0053	13767	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0054	13767	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0055	13767	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0056	13767	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0057	13767	1	0	0	0	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0058	13767	1	0	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0059	13767	1	0	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0060	13767	1	0	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0061	13767	1	0	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0062	13767	1	0	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0063	13767	1	0	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0064	13767	1	0	0	0	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0065	13767	1	0	0	0	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0066	13767	1	0	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0067	13767	1	0	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0068	13767	1	0	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0069	13767	1	0	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856