JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
FAT1_chr4_186582794_186728856	0/0	c0070	13767	1	0	0	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0071	13767	1	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0072	13767	1	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0073	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0074	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0075	13767	1	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0076	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0077	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0078	13767	1	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0079	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0080	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0081	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0082	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0083	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0084	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0085	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0086	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0087	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0088	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0089	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	1/0	c0090	13767	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0091	13767	1	0	0	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0092	13767	1	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0093	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0094	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0095	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0096	13767	1	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0097	13767	1	0	0	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0098	13767	1	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0099	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0100	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0101	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0102	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0103	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0104	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0105	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0106	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0107	13767	1	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0108	13767	1	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0109	13767	1	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0110	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0111	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0112	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0113	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0114	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0115	13767	1	0	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0116	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0117	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0118	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	c0119	13767	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856