JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAT2_chr5_151499092_151596331	0/0	c0002	13050	21	1	9	11	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0003	13050	18	1	2	10	0	5	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0004	13050	13	0	2	10	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0005	13050	13	0	3	9	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/1	c0006	13050	10	2	3	4	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0007	13050	9	0	0	9	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0008	13050	8	0	0	5	0	3	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0009	13050	7	0	0	6	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0010	13050	7	5	0	2	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0011	13050	6	3	0	2	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0012	13050	6	4	0	0	2	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0013	13050	6	1	1	4	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0014	13050	6	6	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0015	13050	6	0	0	5	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0016	13050	6	0	1	2	2	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0017	13050	4	1	0	2	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0018	13050	4	0	1	1	0	2	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0019	13050	4	4	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0020	13050	4	2	0	1	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0021	13050	4	0	0	4	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0022	13050	4	0	0	4	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0023	13050	3	0	2	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0024	13050	3	0	0	3	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0025	13050	3	1	2	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0026	13050	3	0	1	1	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0027	13050	3	0	0	3	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0028	13050	3	0	0	3	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0029	13050	3	3	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0030	13050	3	3	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0031	13050	3	0	0	3	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0032	13050	2	0	0	2	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0033	13050	2	0	2	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0034	13050	2	1	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0035	13050	2	1	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0036	13050	2	2	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0037	13050	2	1	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0038	13050	2	0	2	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0039	13050	2	0	0	2	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0040	13050	2	0	0	2	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0041	13050	2	0	2	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0042	13050	2	0	0	2	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0043	13050	2	2	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0044	13050	2	1	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0045	13050	2	0	0	2	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0046	13050	2	0	0	2	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0047	13050	2	2	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0048	13050	2	0	0	0	0	2	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0049	13050	2	0	1	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0050	13050	2	2	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0051	13050	2	0	1	1	0	0	copy fasta	FAT2	chr5	151499092	151596331