Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AFAP1L1_chr5_149266859_149348637	0/0	c0005	2307	2	0	1	0	1	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	c0006	2307	2	0	0	0	0	2	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	c0007	2307	2	1	1	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	c0008	2307	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	c0009	2307	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	c0010	2307	1	0	1	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	c0011	2307	1	0	0	1	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	c0012	2307	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	c0013	2307	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L2_chr10_114289824_114409502	0/0	c0001	2457	99	10	27	39	8	15	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0002	2457	43	17	6	14	1	5	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0003	2457	26	1	3	20	0	2	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/1	c0004	2457	23	9	1	6	1	5	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0005	2457	9	9	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0006	2457	8	8	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0007	2457	7	6	1	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	1/0	c0008	2457	6	4	0	0	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0009	2457	5	5	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0010	2457	4	0	2	0	0	2	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0011	2457	3	1	1	0	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0012	2457	2	0	0	2	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0013	2457	2	2	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0014	2457	2	0	2	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0015	2457	2	2	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0016	2457	2	0	0	0	0	2	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0017	2457	2	2	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0018	2457	1	0	0	0	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0019	2457	1	0	0	1	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0020	2457	1	0	0	1	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0021	2457	1	0	0	0	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0022	2457	1	0	0	0	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0023	2457	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0024	2457	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0025	2457	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0026	2457	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0027	2457	1	0	0	0	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0028	2457	1	0	0	1	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0029	2457	1	0	1	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0030	2457	1	0	0	0	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0031	2457	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0032	2457	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0033	2457	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	c0034	2457	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1_chr4_7753714_7944861	0/0	c0001	2445	61	6	13	37	0	5	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	1/0	c0002	2445	52	16	8	19	2	6	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0003	2445	48	4	10	24	0	10	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0004	2445	35	14	7	7	3	4	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0005	2445	23	13	10	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0006	2445	14	1	4	6	2	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0007	2445	12	0	0	8	0	4	copy fasta	AFAP1	chr4	7753714	7944861