JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAT2_chr5_151499092_151596331	0/0	c0152	13050	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0153	13050	1	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0154	13050	1	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0155	13050	1	0	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0156	13050	1	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0157	13050	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0158	13050	1	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0159	13050	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0160	13050	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0161	13050	1	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0162	13050	1	0	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0163	13050	1	0	0	0	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0164	13050	1	0	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0165	13050	1	0	0	0	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0166	13050	1	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0167	13050	1	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0168	13050	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0169	13050	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0170	13050	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0171	13050	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0172	13050	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0173	13050	1	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0174	13050	1	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0175	13050	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0176	13050	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0177	13050	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0178	13050	1	0	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	c0179	13050	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT3_chr11_92219818_92901473	0/0	c0001	13770	6	3	1	0	0	2	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0002	13770	5	0	0	4	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0003	13770	5	3	0	1	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0004	13770	5	5	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0005	13770	4	1	2	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0006	13770	4	3	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0007	13770	3	0	2	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	1/0	c0008	13770	2	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0009	13770	2	0	0	0	0	2	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0010	13770	2	2	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0011	13770	2	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0012	13770	2	1	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0013	13770	2	2	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0014	13770	2	2	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0015	13770	1	0	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0016	13770	1	0	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0017	13770	1	0	0	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0018	13770	1	0	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0019	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0020	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0021	13770	1	0	0	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0022	13770	1	0	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473