JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAT3_chr11_92219818_92901473	0/0	c0073	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0074	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0075	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0076	13770	1	0	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0077	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0078	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0079	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0080	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0081	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0082	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0083	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0084	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0085	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	c0086	13770	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT4_chr4_125309955_125497932	0/0	c0001	14952	26	15	10	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0002	14952	25	0	6	14	1	4	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0003	14952	19	0	7	7	2	3	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0004	14952	18	1	3	12	0	2	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0005	14952	12	0	1	6	1	4	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0006	14952	11	0	7	4	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0007	14952	10	0	0	10	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0008	14952	7	0	0	7	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0009	14952	6	1	2	0	1	2	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0010	14952	6	0	0	5	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0011	14952	6	0	1	2	1	2	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0012	14952	6	0	3	1	2	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0013	14952	6	6	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0014	14952	5	0	0	5	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0015	14952	4	0	2	2	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0016	14952	4	0	3	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0017	14952	4	0	0	4	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0018	14952	4	4	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0019	14952	4	0	1	2	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/1	c0020	14952	3	0	1	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0021	14952	3	3	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0022	14952	3	1	0	0	1	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0023	14952	3	0	0	0	3	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0024	14952	3	0	3	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0025	14952	2	0	0	2	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0026	14952	2	0	0	2	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0027	14952	2	1	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0028	14952	2	1	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0029	14952	2	0	2	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0030	14952	2	2	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0031	14952	2	0	2	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0032	14952	2	2	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0033	14952	2	2	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0034	14952	2	2	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0035	14952	2	0	0	2	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0036	14952	2	2	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932