JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAT4_chr4_125309955_125497932	0/0	c0087	14952	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0088	14952	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0089	14952	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0090	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0091	14952	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0092	14952	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0093	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0094	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0095	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0096	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0097	14952	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0098	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0099	14952	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0100	14952	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0101	14952	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0102	14952	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0103	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0104	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0105	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0106	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0107	14952	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0108	14952	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0109	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0110	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0111	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0112	14952	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0113	14952	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0114	14952	1	0	0	0	1	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0115	14952	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0116	14952	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0117	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0118	14952	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0119	14952	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0120	14952	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0121	14952	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0122	14952	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0123	14952	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	c0124	14952	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FATE1_chrX_151711035_151728194	1/1	c0001	552	286	73	56	118	10	27	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	c0002	552	54	6	5	39	1	3	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	c0003	552	1	0	1	0	0	0	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	c0004	552	1	1	0	0	0	0	copy fasta	FATE1	chrX	151711035	151728194
FAU_chr11_65115630_65127134	1/1	c0001	402	391	92	70	170	16	41	copy fasta	FAU	chr11	65115630	65127134
FAU_chr11_65115630_65127134	0/0	c0002	402	1	0	0	0	0	1	copy fasta	FAU	chr11	65115630	65127134
FAXC_chr6_99266168_99354674	0/1	c0001	1230	374	81	62	171	16	43	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	1/0	c0002	1230	21	1	15	0	2	2	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	c0003	1230	1	0	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	c0004	1230	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	c0005	1230	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXDC2_chr5_154813492_154855603	1/1	c0001	1002	293	98	61	90	12	30	copy fasta	FAXDC2	chr5	154813492	154855603