JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAXDC2_chr5_154813492_154855603	0/0	c0002	1002	10	0	5	0	3	2	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	c0003	1002	2	0	0	0	0	2	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	c0004	1002	1	0	0	0	1	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	c0005	1002	1	0	0	0	0	1	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	c0006	1002	1	1	0	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	c0007	1002	1	1	0	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	c0008	1002	1	0	0	0	0	1	copy fasta	FAXDC2	chr5	154813492	154855603
FBF1_chr17_75904574_75946042	1/1	c0001	3447	121	18	29	52	5	15	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0002	3447	74	16	9	40	5	4	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0003	3447	28	11	3	10	0	4	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0004	3447	27	23	3	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0005	3447	9	3	4	0	0	2	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0006	3447	7	0	2	4	0	1	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0007	3447	5	0	0	5	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0008	3447	5	4	1	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0009	3447	5	5	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0010	3447	4	2	1	0	0	1	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0011	3447	3	3	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0012	3447	3	3	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0013	3447	2	1	1	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0014	3447	2	0	0	0	0	2	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0015	3447	2	0	0	2	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0016	3447	2	0	0	0	0	2	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0017	3447	2	0	0	0	2	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0018	3447	2	2	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0019	3447	1	0	0	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0020	3447	1	0	0	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0021	3447	1	0	0	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0022	3447	1	0	1	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0023	3447	1	0	0	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0024	3447	1	0	0	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0025	3447	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0026	3447	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0027	3447	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0028	3447	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0029	3447	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0030	3447	1	0	0	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0031	3447	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0032	3447	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	c0033	3447	1	0	0	0	0	1	copy fasta	FBF1	chr17	75904574	75946042
FBH1_chr10_5885243_5942593	1/1	c0001	3131	281	68	54	113	12	32	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0002	3131	29	4	0	21	0	4	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0003	3131	7	0	4	3	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0004	3131	4	2	1	0	1	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0005	3131	3	3	0	0	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0006	3131	3	3	0	0	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0007	3131	2	2	0	0	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0008	3131	2	0	0	0	0	2	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0009	3131	1	0	0	0	1	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0010	3131	1	0	0	0	0	1	copy fasta	FBH1	chr10	5885243	5942593