JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBH1_chr10_5885243_5942593	0/0	c0011	3131	1	0	0	1	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0012	3131	1	0	0	1	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0013	3131	1	0	0	1	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0014	3131	1	1	0	0	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0015	3131	1	0	1	0	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0016	3131	1	0	0	1	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0017	3131	1	1	0	0	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0018	3131	1	0	0	0	0	1	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0019	3131	1	1	0	0	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0020	3131	1	0	0	1	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	c0021	3131	1	1	0	0	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBLIM1_chr1_15753795_15791589	0/1	c0001	1122	189	24	40	84	7	33	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	1/0	c0002	1122	126	45	25	38	4	13	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0003	1122	14	4	6	0	4	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0004	1122	6	6	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0005	1122	5	4	1	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0006	1122	2	0	0	1	1	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0007	1122	2	0	2	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0008	1122	2	2	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0009	1122	2	2	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0010	1122	2	0	0	2	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0011	1122	1	0	0	1	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0012	1122	1	1	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0013	1122	1	1	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	c0014	1122	1	1	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLL1_chr5_168524305_168535634	1/1	c0001	1005	247	56	51	94	13	31	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	c0002	1005	167	32	20	104	1	10	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	c0003	1005	30	1	6	17	2	4	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	c0004	1002	5	5	0	0	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	c0005	1005	3	3	0	0	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	c0006	1005	2	0	0	2	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	c0007	1005	2	0	1	0	0	1	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	c0008	1005	1	0	0	1	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	c0009	1005	1	0	0	1	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	c0010	1005	1	1	0	0	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	c0011	966	1	0	0	1	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLN1_chr22_45497883_45606135	0/0	c0001	2112	241	53	41	103	9	35	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/1	c0002	2112	72	21	17	21	3	9	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0003	2112	4	1	2	0	0	1	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0004	2112	3	2	0	1	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0005	2112	2	2	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0006	2112	2	2	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0007	2112	2	2	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0008	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0009	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	1/0	c0010	2112	1	0	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0011	2112	1	0	1	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0012	2112	1	0	0	1	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0013	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0014	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135