JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBLN1_chr22_45497883_45606135	0/0	c0015	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0016	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0017	2112	1	0	0	1	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0018	2112	1	0	1	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0019	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0020	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0021	2112	1	0	0	1	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0022	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0023	2112	1	0	0	0	0	1	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0024	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0025	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0026	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	c0027	2112	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN2_chr3_13544125_13643404	0/1	c0001	3696	45	6	14	15	2	7	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0002	3696	39	7	12	17	1	2	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0003	3696	19	1	6	9	0	3	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0004	3696	17	4	1	12	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0005	3696	12	0	1	7	0	4	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0006	3696	12	0	0	12	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0007	3696	10	0	0	10	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0008	3696	9	8	1	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0009	3696	8	0	4	0	1	3	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0010	3696	7	0	0	6	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	1/0	c0011	3696	6	1	3	0	1	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0012	3696	5	5	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0013	3696	5	1	2	2	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0014	3696	5	5	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0015	3696	5	5	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0016	3696	4	0	0	3	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0017	3696	4	0	0	4	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0018	3696	4	3	1	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0019	3696	4	3	1	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0020	3696	4	4	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0021	3696	3	0	0	2	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0022	3696	3	0	0	0	1	2	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0023	3696	3	0	2	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0024	3696	3	1	0	1	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0025	3696	3	0	0	3	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0026	3696	3	0	1	2	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0027	3696	2	0	0	0	0	2	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0028	3696	2	2	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0029	3696	2	0	0	1	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0030	3696	2	2	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0031	3696	2	2	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0032	3696	2	0	2	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0033	3696	2	0	0	2	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0034	3696	2	2	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0035	3696	2	2	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0036	3696	2	2	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0037	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404