JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBLN2_chr3_13544125_13643404	0/0	c0038	3696	1	0	0	0	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0039	3696	1	0	1	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0040	3696	1	0	0	0	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0041	3696	1	0	0	0	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0042	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0043	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0044	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0045	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0046	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0047	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0048	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0049	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0050	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0051	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0052	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0053	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0054	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0055	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0056	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0057	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0058	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0059	3696	1	0	1	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0060	3696	1	0	1	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0061	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0062	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0063	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0064	3696	1	0	0	0	1	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0065	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0066	3696	1	0	1	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0067	3696	1	0	0	0	1	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0068	3696	1	0	1	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0069	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0070	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0071	3696	1	0	0	0	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0072	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0073	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0074	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0075	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0076	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0077	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0078	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0079	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0080	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0081	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0082	3696	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0083	3702	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0084	3702	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0085	3702	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	c0086	3696	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN5_chr14_91864411_91952694	0/0	c0001	1347	296	81	54	120	15	26	copy fasta	FBLN5	chr14	91864411	91952694