Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AFAP1_chr4_7753714_7944861	0/0	c0008	2445	9	1	3	0	2	3	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0009	2445	6	6	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0010	2445	6	4	0	1	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0011	2445	4	0	0	4	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0012	2445	3	3	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0013	2445	3	0	1	2	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0014	2445	3	1	1	0	1	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0015	2445	2	1	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0016	2445	2	0	0	2	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0017	2445	2	1	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0018	2445	2	2	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0019	2445	2	0	0	0	0	2	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0020	2445	2	0	0	0	1	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/1	c0021	2445	2	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0022	2445	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0023	2445	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0024	2445	1	0	0	0	1	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0025	2445	1	0	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0026	2445	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0027	2445	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0028	2445	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0029	2445	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0030	2445	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0031	2445	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0032	2445	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0033	2445	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0034	2445	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0035	2445	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0036	2445	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0037	2445	1	0	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0038	2445	1	0	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0039	2445	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0040	2445	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0041	2445	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0042	2445	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0043	2445	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0044	2445	1	0	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0045	2445	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	c0046	2445	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFDN_chr6_167821911_167977023	0/0	c0001	5496	73	18	14	33	1	7	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	1/0	c0002	5496	70	16	16	26	3	8	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/1	c0003	5496	59	9	13	25	3	8	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0004	5496	37	13	8	9	5	2	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0005	5496	31	4	2	24	0	1	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0006	5496	14	14	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0007	5496	5	3	1	0	0	1	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0008	5496	3	0	3	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0009	5496	3	0	3	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0010	5496	3	3	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0011	5496	3	0	1	0	0	2	copy fasta	AFDN	chr6	167821911	167977023