JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBLN5_chr14_91864411_91952694	1/1	c0002	1347	60	16	10	18	1	13	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	c0003	1347	2	1	1	0	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	c0004	1347	2	0	1	0	0	1	copy fasta	FBLN5	chr14	91864411	91952694
FBLN7_chr2_112133385_112193218	1/1	c0001	1320	325	81	67	125	17	33	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0002	1320	6	5	0	0	1	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0003	1317	3	3	0	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0004	1320	2	0	2	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0005	1320	2	0	0	0	0	2	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0006	1320	1	0	0	0	0	1	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0007	1320	1	0	0	0	0	1	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0008	1320	1	0	1	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0009	1320	1	0	1	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0010	1320	1	0	0	0	0	1	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0011	1320	1	0	1	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0012	1320	1	1	0	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	c0013	1320	1	0	0	1	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBL_chr19_39829458_39851379	1/1	c0001	966	366	85	81	142	14	42	copy fasta	FBL	chr19	39829458	39851379
FBL_chr19_39829458_39851379	0/0	c0002	966	6	6	0	0	0	0	copy fasta	FBL	chr19	39829458	39851379
FBL_chr19_39829458_39851379	0/0	c0003	966	3	0	0	3	0	0	copy fasta	FBL	chr19	39829458	39851379
FBL_chr19_39829458_39851379	0/0	c0004	966	1	0	0	1	0	0	copy fasta	FBL	chr19	39829458	39851379
FBL_chr19_39829458_39851379	0/0	c0005	966	1	1	0	0	0	0	copy fasta	FBL	chr19	39829458	39851379
FBL_chr19_39829458_39851379	0/0	c0006	966	1	0	1	0	0	0	copy fasta	FBL	chr19	39829458	39851379
FBN1_chr15_48403313_48650709	1/1	c0001	8616	137	23	20	58	6	28	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0002	8616	45	20	9	7	3	6	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0003	8616	36	0	3	33	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0004	8616	30	2	0	23	1	4	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0005	8616	14	14	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0006	8616	2	2	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0007	8616	2	2	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0008	8616	2	2	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0009	8616	2	2	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0010	8616	2	2	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0011	8616	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0012	8616	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0013	8616	1	0	1	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0014	8616	1	0	0	1	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0015	8616	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0016	8616	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0017	8616	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0018	8616	1	0	0	1	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0019	8616	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0020	8616	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0021	8616	1	0	1	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0022	8616	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0023	8616	1	0	0	1	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0024	8616	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0025	8616	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	c0026	8616	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN2_chr5_128252909_128543245	0/0	c0001	8739	46	2	15	14	4	11	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	c0002	8739	33	1	3	26	1	2	copy fasta	FBN2	chr5	128252909	128543245