JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBP1_chr9_94598133_94644518	0/0	c0010	1017	1	1	0	0	0	0	copy fasta	FBP1	chr9	94598133	94644518
FBP1_chr9_94598133_94644518	0/0	c0011	1017	1	1	0	0	0	0	copy fasta	FBP1	chr9	94598133	94644518
FBP1_chr9_94598133_94644518	0/0	c0012	1017	1	0	0	1	0	0	copy fasta	FBP1	chr9	94598133	94644518
FBP1_chr9_94598133_94644518	0/0	c0013	1017	1	0	0	0	0	1	copy fasta	FBP1	chr9	94598133	94644518
FBP1_chr9_94598133_94644518	0/0	c0014	1017	1	0	0	1	0	0	copy fasta	FBP1	chr9	94598133	94644518
FBP1_chr9_94598133_94644518	0/0	c0015	1017	1	0	0	1	0	0	copy fasta	FBP1	chr9	94598133	94644518
FBP1_chr9_94598133_94644518	0/0	c0016	1017	1	0	0	0	0	1	copy fasta	FBP1	chr9	94598133	94644518
FBP1_chr9_94598133_94644518	0/0	c0017	1017	1	0	0	1	0	0	copy fasta	FBP1	chr9	94598133	94644518
FBP2_chr9_94553720_94598824	0/1	c0001	1020	239	43	42	118	11	24	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0002	1020	34	8	5	19	0	2	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0003	1020	27	3	6	12	1	5	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	1/0	c0004	1020	26	1	4	15	1	4	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0005	1020	19	16	0	0	3	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0006	1020	12	11	1	0	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0007	1020	4	1	0	3	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0008	1020	4	4	0	0	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0009	1020	3	3	0	0	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0010	1020	2	2	0	0	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0011	1020	2	2	0	0	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0012	1020	2	2	0	0	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0013	1020	1	0	1	0	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0014	1020	1	0	0	0	0	1	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0015	1020	1	0	0	0	0	1	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0016	1020	1	0	0	1	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0017	1020	1	0	0	0	0	1	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	c0018	1020	1	0	1	0	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBRSL1_chr12_132485151_132590188	0/0	c0001	3009	51	14	10	27	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0002	3009	43	1	9	25	1	7	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0003	3009	39	8	7	11	7	6	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0004	3009	28	6	9	5	2	6	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0005	3009	19	7	3	1	2	6	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/1	c0006	3009	9	2	1	1	2	2	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0007	3009	7	7	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0008	3009	7	7	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0009	3010	6	1	0	5	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0010	3009	6	0	0	5	1	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0011	3009	5	5	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0012	3009	5	4	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0013	3009	5	0	0	5	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0014	3010	4	1	0	3	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0015	3010	4	0	2	1	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0016	3011	4	0	1	2	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0017	3009	4	0	0	4	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0018	3009	3	3	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0019	3010	3	1	0	1	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0020	3010	3	1	2	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0021	3009	3	0	3	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0022	3010	3	0	0	0	0	3	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0023	3010	3	0	0	3	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0024	3009	3	0	3	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188