JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBRSL1_chr12_132485151_132590188	0/0	c0025	3009	3	0	0	3	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0026	3010	2	0	0	2	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0027	3009	2	2	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	1/0	c0028	3009	2	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0029	3011	2	0	0	1	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0030	3010	2	2	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0031	3010	2	0	0	1	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0032	3010	2	0	0	0	0	2	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0033	3011	2	0	0	2	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0034	3011	2	1	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0035	3010	2	0	0	1	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0036	3010	2	0	0	1	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0037	3009	2	2	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0038	2994	2	0	1	0	1	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0039	3010	2	0	0	2	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0040	3011	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0041	3011	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0042	3010	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0043	3010	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0044	3009	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0045	3009	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0046	3009	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0047	3009	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0048	3009	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0049	3009	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0050	3009	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0051	3011	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0052	3012	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0053	3010	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0054	3011	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0055	3009	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0056	3009	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0057	3010	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0058	3010	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0059	3011	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0060	3011	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0061	3009	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0062	3010	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0063	3010	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0064	3011	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0065	3011	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0066	3011	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0067	3010	1	0	0	0	1	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0068	3009	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0069	3010	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0070	3009	1	0	0	0	1	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0071	3010	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0072	3009	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0073	3009	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0074	3009	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188