JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBRSL1_chr12_132485151_132590188	0/0	c0075	3009	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0076	3011	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0077	3010	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0078	3009	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0079	3009	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0080	3010	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0081	3009	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0082	3009	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0083	3009	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0084	3010	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0085	3010	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0086	3009	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0087	3009	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0088	2981	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	c0089	3010	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRS_chr16_30653431_30675810	1/1	c0001	2943	227	55	51	80	13	26	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0002	2943	17	16	1	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0003	2943	4	0	4	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0004	2943	3	3	0	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0005	2943	2	0	0	2	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0006	2943	2	0	0	2	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0007	2943	1	1	0	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0008	2943	1	1	0	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0009	2943	1	0	1	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0010	2943	1	0	1	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0011	2943	1	0	0	1	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0012	2943	1	0	0	1	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	c0013	2943	1	0	0	0	1	0	copy fasta	FBRS	chr16	30653431	30675810
FBXL12_chr19_9805270_9824079	1/1	c0001	981	266	68	64	89	14	29	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	c0002	981	54	23	12	11	2	6	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	c0003	981	12	0	0	12	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	c0004	981	3	3	0	0	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	c0005	981	1	1	0	0	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	c0006	981	1	1	0	0	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	c0007	981	1	0	0	0	0	1	copy fasta	FBXL12	chr19	9805270	9824079
FBXL13_chr7_102806189_103079796	0/0	c0001	2478	93	10	18	46	4	15	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/1	c0002	2478	84	34	21	14	6	8	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0003	2478	37	4	1	26	0	6	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0004	2478	29	0	2	20	1	6	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0005	2478	22	0	1	21	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0006	2478	13	1	4	8	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0007	2478	9	0	7	1	0	1	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	1/0	c0008	2478	9	8	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0009	2478	8	8	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0010	2478	5	5	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0011	2478	5	4	1	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0012	2478	2	1	1	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0013	2478	1	0	0	1	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0014	2478	1	0	0	0	1	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0015	2478	1	0	0	1	0	0	copy fasta	FBXL13	chr7	102806189	103079796