Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AFDN_chr6_167821911_167977023	0/0	c0012	5496	2	2	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0013	5497	2	0	0	1	0	1	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0014	5497	2	0	0	2	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0015	5496	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0016	5496	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0017	5497	1	0	1	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0018	5450	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0019	5496	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0020	5496	1	0	1	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0021	5496	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0022	5497	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0023	5496	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0024	5496	1	0	0	0	0	1	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0025	5496	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0026	5496	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0027	5496	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0028	5497	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0029	5497	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0030	5497	1	0	1	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0031	5496	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0032	5496	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	c0033	5496	1	0	0	0	0	1	copy fasta	AFDN	chr6	167821911	167977023
AFF1_chr4_86930011_87146039	1/1	c0001	3657	220	38	45	96	12	27	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0002	3657	14	13	1	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0003	3657	13	10	0	0	1	2	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0004	3657	5	5	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0005	3657	4	4	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0006	3657	4	4	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0007	3657	3	3	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0008	3657	3	3	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0009	3657	2	0	0	2	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0010	3657	2	0	1	0	1	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0011	3657	2	2	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0012	3657	2	0	0	2	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0013	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0014	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0015	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0016	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0017	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0018	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0019	3657	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0020	3657	1	0	1	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0021	3657	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0022	3657	1	0	0	0	0	1	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0023	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0024	3657	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0025	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0026	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0027	3657	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0028	3657	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039