JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXL4_chr6_98863535_98952946	0/0	c0004	1866	3	0	1	0	0	2	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	c0005	1866	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	c0006	1866	1	0	1	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	c0007	1866	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	c0008	1866	1	0	1	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	c0009	1866	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	c0010	1866	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL5_chr4_15599381_15660357	1/1	c0001	2076	372	81	64	180	13	32	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	c0002	2076	37	9	6	12	1	9	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	c0003	2076	2	2	0	0	0	0	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	c0004	2076	1	1	0	0	0	0	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	c0005	2076	1	1	0	0	0	0	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	c0006	2076	1	0	0	1	0	0	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	c0007	2076	1	0	0	0	0	1	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	c0008	2076	1	0	0	1	0	0	copy fasta	FBXL5	chr4	15599381	15660357
FBXL6_chr8_144350431_144363472	0/1	c0001	1620	352	79	63	153	16	40	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0002	1620	10	5	2	0	1	2	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0003	1620	6	4	2	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0004	1620	5	0	0	5	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	1/0	c0005	1620	4	3	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0006	1620	3	3	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0007	1620	1	1	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0008	1620	1	0	1	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0009	1620	1	0	0	0	1	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0010	1620	1	1	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0011	1620	1	0	0	1	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0012	1620	1	0	0	1	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0013	1620	1	1	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	c0014	1620	1	1	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL7_chr5_15495180_15944793	0/0	c0001	1476	107	46	20	26	5	10	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	c0002	1476	5	5	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	c0003	1476	2	2	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	c0004	1476	2	2	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	c0005	1476	2	1	1	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	c0006	1476	1	0	0	0	1	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	c0007	1476	1	0	0	1	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	c0008	1476	1	0	0	1	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	c0009	1476	1	0	1	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL8_chr16_67154957_67169174	1/1	c0001	1125	196	59	44	51	10	30	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	c0002	1125	22	12	1	6	0	3	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	c0003	1125	19	19	0	0	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	c0004	1125	2	0	0	0	0	2	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	c0005	1125	1	1	0	0	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	c0006	1125	1	0	0	1	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	c0007	1125	1	1	0	0	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	c0008	1125	1	0	1	0	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	c0009	1125	1	0	0	0	0	1	copy fasta	FBXL8	chr16	67154957	67169174
FBXO10_chr9_37505892_37581380	1/1	c0001	2871	120	29	26	44	3	16	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0002	2871	98	12	17	49	6	14	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0003	2871	28	26	2	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380