JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXO10_chr9_37505892_37581380	0/0	c0004	2871	19	3	12	0	3	1	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0005	2871	9	9	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0006	2871	3	3	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0007	2871	3	3	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0008	2871	2	2	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0009	2871	2	0	0	0	0	2	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0010	2871	1	0	0	0	0	1	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0011	2871	1	0	0	1	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0012	2871	1	1	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0013	2871	1	1	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0014	2871	1	1	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	c0015	2871	1	0	1	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO11_chr2_47801920_47911498	1/1	c0001	2784	297	74	56	117	14	34	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	c0002	2784	9	8	1	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	c0003	2787	3	1	1	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	c0004	2784	3	3	0	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	c0005	2769	2	1	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	c0006	2784	1	0	1	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	c0007	2784	1	0	1	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	c0008	2784	1	0	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	c0009	2784	1	1	0	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO15_chr18_74068368_74152834	1/1	c0001	1533	292	78	60	113	10	29	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0002	1533	14	0	0	14	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0003	1533	4	4	0	0	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0004	1533	3	2	1	0	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0005	1533	2	0	0	2	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0006	1533	2	0	2	0	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0007	1533	1	0	0	1	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0008	1533	1	0	1	0	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0009	1533	1	0	0	0	0	1	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0010	1533	1	0	0	0	0	1	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0011	1533	1	0	0	0	0	1	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0012	1533	1	1	0	0	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	c0013	1533	1	1	0	0	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO16_chr8_28423412_28495229	1/0	c0001	879	183	24	34	87	10	27	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/1	c0002	879	143	24	22	79	3	14	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	c0003	879	30	27	2	0	1	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	c0004	879	12	12	0	0	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	c0005	879	8	6	0	2	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	c0006	879	5	0	0	5	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	c0007	879	5	0	1	4	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	c0008	879	2	2	0	0	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	c0009	879	2	2	0	0	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	c0010	879	1	0	0	1	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	c0011	879	1	0	1	0	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	c0012	879	1	1	0	0	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	c0013	879	1	0	0	0	0	1	copy fasta	FBXO16	chr8	28423412	28495229
FBXO17_chr19_38936401_38980742	0/1	c0001	837	191	16	24	115	7	28	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	c0002	837	149	63	32	45	3	6	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	1/0	c0003	837	41	3	17	2	7	11	copy fasta	FBXO17	chr19	38936401	38980742