JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXO2_chr1_11643387_11659429	0/0	c0003	891	116	3	18	83	2	10	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	c0004	888	10	10	0	0	0	0	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	c0005	894	9	1	2	4	0	2	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	c0006	894	1	1	0	0	0	0	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	c0007	891	1	0	0	1	0	0	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	c0008	888	1	1	0	0	0	0	copy fasta	FBXO2	chr1	11643387	11659429
FBXO30_chr6_145788502_145819795	1/0	c0001	2238	185	35	41	91	5	12	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/1	c0002	2238	114	12	17	56	7	21	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0003	2238	42	37	4	0	0	1	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0004	2238	6	0	0	6	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0005	2238	5	5	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0006	2238	3	0	0	0	2	1	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0007	2238	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0008	2238	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0009	2238	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0010	2238	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0011	2238	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0012	2238	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0013	2238	1	0	0	0	0	1	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0014	2238	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	c0015	2238	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO31_chr16_87321987_87388776	1/1	c0001	1620	364	88	74	141	16	43	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	c0002	1620	4	4	0	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	c0003	1620	2	2	0	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	c0004	1620	2	2	0	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	c0005	1620	1	0	0	1	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	c0006	1620	1	0	1	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	c0007	1620	1	0	1	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	c0008	1620	1	0	0	0	0	1	copy fasta	FBXO31	chr16	87321987	87388776
FBXO32_chr8_123492889_123546206	1/1	c0001	1068	246	47	48	105	12	32	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0002	1068	95	11	9	70	2	3	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0003	1068	24	8	10	0	2	4	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0004	1068	14	13	1	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0005	1068	6	6	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0006	1068	6	0	2	4	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0007	1068	4	4	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0008	1068	2	0	0	0	0	2	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0009	1068	2	2	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0010	1068	2	2	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0011	1068	1	0	0	0	0	1	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0012	1068	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0013	1068	1	0	1	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0014	1068	1	0	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0015	1068	1	0	1	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0016	1068	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	c0017	1068	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO33_chr14_39392684_39437433	1/1	c0001	1668	319	70	75	138	7	27	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	c0002	1668	29	1	2	13	1	12	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	c0003	1668	24	21	1	1	0	1	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	c0004	1668	5	0	0	5	0	0	copy fasta	FBXO33	chr14	39392684	39437433