JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXO33_chr14_39392684_39437433	0/0	c0005	1668	4	0	1	0	0	3	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	c0006	1659	3	1	0	0	2	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	c0007	1668	2	2	0	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	c0008	1668	1	0	0	1	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	c0009	1668	1	1	0	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	c0010	1668	1	0	0	0	0	1	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	c0011	1668	1	0	1	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO34_chr14_55266421_55358611	1/1	c0001	2136	169	31	28	83	4	21	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0002	2136	71	13	11	31	6	10	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0003	2136	39	8	1	29	0	1	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0004	2136	23	21	2	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0005	2136	14	0	8	0	0	6	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0006	2136	5	3	2	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0007	2136	4	2	2	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0008	2136	2	0	0	2	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0009	2136	2	0	0	2	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0010	2136	2	0	0	0	0	2	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0011	2136	1	1	0	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0012	2136	1	0	0	1	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	c0013	2136	1	1	0	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO36_chr2_229917503_230018119	1/1	c0001	567	283	80	45	109	11	36	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	c0002	567	56	12	19	15	5	5	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	c0003	567	1	0	0	1	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	c0004	567	1	0	0	0	0	1	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	c0005	567	1	0	0	1	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO38_chr5_148378958_148447836	1/1	c0001	3567	237	40	30	136	5	24	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	c0002	3567	94	34	15	30	1	14	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	c0003	3567	20	0	3	15	0	2	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	c0004	3567	16	13	3	0	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	c0005	3567	1	0	1	0	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	c0006	3567	1	0	0	1	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	c0007	3567	1	1	0	0	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO39_chr17_6771215_6792646	0/0	c0001	1329	167	14	16	124	4	9	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	1/1	c0002	1329	158	21	30	65	8	32	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0003	1329	30	7	16	0	4	3	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0004	1329	25	24	1	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0005	1329	15	4	3	8	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0006	1329	14	7	7	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0007	1329	9	4	0	5	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0008	1329	8	0	0	8	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0009	1329	7	4	3	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0010	1329	5	5	0	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0011	1329	5	0	3	0	0	2	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0012	1329	3	3	0	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0013	1329	2	1	1	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0014	1329	1	0	0	0	0	1	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0015	1329	1	1	0	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0016	1329	1	1	0	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0017	1329	1	1	0	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0018	1329	1	0	0	1	0	0	copy fasta	FBXO39	chr17	6771215	6792646