JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXO39_chr17_6771215_6792646	0/0	c0019	1329	1	1	0	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0020	1329	1	0	0	0	0	1	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	c0021	1329	1	0	0	1	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO3_chr11_33735944_33779520	1/1	c0001	1416	370	81	61	174	10	42	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	c0002	1416	7	0	3	0	2	2	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	c0003	1413	4	0	0	4	0	0	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	c0004	1416	1	1	0	0	0	0	copy fasta	FBXO3	chr11	33735944	33779520
FBXO40_chr3_121588379_121635295	1/1	c0001	2130	219	59	43	79	12	24	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0002	2130	155	16	29	87	4	19	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0003	2130	16	15	1	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0004	2130	4	3	1	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0005	2130	2	0	0	2	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0006	2130	2	0	1	0	1	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0007	2130	2	0	0	0	1	1	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0008	2130	1	1	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0009	2130	1	0	0	1	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0010	2130	1	0	0	1	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0011	2130	1	0	1	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0012	2130	1	0	0	0	0	1	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0013	2130	1	0	0	1	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0014	2130	1	0	0	0	0	1	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	c0015	2130	1	0	0	1	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO41_chr2_73249690_73289478	0/0	c0001	2628	107	49	19	32	4	3	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	1/1	c0002	2628	103	8	27	45	4	17	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0003	2628	65	19	4	32	3	7	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0004	2628	55	4	10	34	2	5	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0005	2628	10	1	4	0	0	5	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0006	2628	7	0	0	7	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0007	2628	5	4	0	0	1	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0008	2628	3	3	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0009	2628	2	0	2	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0010	2616	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0011	2610	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0012	2610	1	0	0	0	1	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0013	2628	1	0	0	0	0	1	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0014	2628	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0015	2628	1	0	0	0	0	1	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0016	2628	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0017	2628	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0018	2628	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0019	2628	1	0	0	0	0	1	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0020	2628	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0021	2628	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0022	2628	1	0	0	0	1	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0023	2628	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0024	2628	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0025	2628	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	c0026	2610	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO42_chr1_16241840_16357480	1/0	c0001	2154	97	35	24	21	2	14	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	c0002	2154	89	5	19	47	6	12	copy fasta	FBXO42	chr1	16241840	16357480