JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXO42_chr1_16241840_16357480	0/1	c0003	2154	79	31	17	22	3	5	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	c0004	2154	9	1	2	5	1	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	c0005	2154	8	8	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	c0006	2154	4	4	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	c0007	2154	3	3	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	c0008	2154	1	1	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	c0009	2154	1	0	0	0	0	1	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	c0010	2154	1	1	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	c0011	2154	1	0	0	1	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	c0012	2154	1	1	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO43_chr8_100128351_100150817	0/1	c0001	2127	224	43	45	100	10	25	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	1/0	c0002	2127	106	19	24	50	2	10	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	c0003	2127	55	22	3	25	0	5	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	c0004	2127	3	3	0	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	c0005	2127	1	1	0	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	c0006	2127	1	1	0	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	c0007	2127	1	1	0	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	c0008	2127	1	0	0	1	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO44_chr1_11649877_11668327	1/1	c0001	768	378	68	71	174	16	47	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	c0002	768	20	19	1	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	c0003	768	2	1	1	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	c0004	768	2	2	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	c0005	768	1	0	0	0	0	1	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	c0006	768	1	1	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	c0007	768	1	0	1	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	c0008	768	1	0	0	1	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	c0009	768	1	0	0	1	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	c0010	768	1	0	1	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	c0011	768	1	1	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	c0012	768	1	0	1	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO45_chr3_196563660_196594059	1/1	c0001	861	418	82	75	197	15	47	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	c0002	861	20	0	6	11	0	3	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	c0003	855	5	4	1	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	c0004	861	4	4	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	c0005	873	2	2	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	c0006	861	2	0	0	2	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	c0007	861	1	0	0	0	1	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO46_chr19_45705629_45735896	1/1	c0001	1812	355	77	66	170	9	31	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	c0002	1812	49	8	13	19	1	8	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	c0003	1812	1	0	1	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	c0004	1812	1	1	0	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	c0005	1812	1	1	0	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	c0006	1812	1	1	0	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	c0007	1812	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	c0008	1812	1	0	0	0	0	1	copy fasta	FBXO46	chr19	45705629	45735896
FBXO47_chr17_38931432_38972403	0/1	c0001	1359	328	74	47	155	12	39	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	1/0	c0002	1359	5	0	2	0	2	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	c0003	1359	3	0	0	3	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	c0004	1359	2	0	0	2	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	c0005	1359	2	0	0	2	0	0	copy fasta	FBXO47	chr17	38931432	38972403