JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXO47_chr17_38931432_38972403	0/0	c0006	1359	1	0	1	0	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	c0007	1359	1	0	0	0	0	1	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	c0008	1359	1	1	0	0	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	c0009	1359	1	1	0	0	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO48_chr2_68454422_68472294	1/1	c0001	468	233	90	35	62	14	30	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	c0002	468	1	0	1	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO4_chr5_41920281_41946743	1/1	c0001	1164	228	85	55	44	14	28	copy fasta	FBXO4	chr5	41920281	41946743
FBXO4_chr5_41920281_41946743	0/0	c0002	1164	21	1	10	10	0	0	copy fasta	FBXO4	chr5	41920281	41946743
FBXO4_chr5_41920281_41946743	0/0	c0003	1164	1	0	1	0	0	0	copy fasta	FBXO4	chr5	41920281	41946743
FBXO5_chr6_152965535_152988041	0/1	c0001	1344	273	77	40	119	6	30	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	1/0	c0002	1344	118	1	23	73	7	13	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	c0003	1344	35	11	14	7	1	2	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	c0004	1344	5	5	0	0	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	c0005	1344	2	0	0	0	2	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	c0006	1344	1	0	0	0	0	1	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	c0007	1344	1	0	0	1	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	c0008	1344	1	0	0	1	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	c0009	1344	1	0	1	0	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	c0010	1344	1	0	0	1	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO6_chr1_11659200_11679354	1/1	c0001	882	287	65	49	128	12	31	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	c0002	882	61	8	16	28	1	8	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	c0003	882	27	12	6	1	1	7	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	c0004	882	3	0	1	0	0	2	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	c0005	882	3	3	0	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	c0006	882	3	3	0	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	c0007	882	2	2	0	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	c0008	882	2	0	0	2	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	c0009	882	1	0	0	1	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	c0010	882	1	1	0	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO7_chr22_32469811_32503829	0/0	c0001	1569	237	45	34	135	6	17	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	1/1	c0002	1569	167	41	32	60	11	21	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	c0003	1569	3	0	2	0	1	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	c0004	1569	2	2	0	0	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	c0005	1569	1	1	0	0	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	c0006	1569	1	0	1	0	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	c0007	1569	1	0	1	0	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	c0008	1569	1	0	0	1	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	c0009	1569	1	1	0	0	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO8_chr4_174231658_174288667	0/0	c0001	960	367	84	69	160	12	42	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	c0002	960	4	4	0	0	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	c0003	960	1	0	0	1	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	c0004	960	1	0	0	0	0	1	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	c0005	960	1	0	0	1	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	c0006	960	1	0	0	0	0	1	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	c0007	960	1	0	1	0	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO9_chr6_53060404_53105873	1/1	c0001	1314	307	83	62	128	10	22	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	c0002	1314	2	0	0	0	0	2	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	c0003	1314	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXW10B_chr17_15578886_15624704	0/1	c0001	2259	90	7	30	32	4	16	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0002	2259	65	11	15	27	2	10	copy fasta	FBXW10B	chr17	15578886	15624704