JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXW10B_chr17_15578886_15624704	0/0	c0003	2259	47	0	11	27	4	5	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0004	2259	40	6	0	31	0	3	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0005	2259	31	10	1	19	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0006	2259	24	1	0	21	0	2	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0007	2259	18	15	1	0	0	2	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0008	2259	13	0	2	10	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0009	2259	13	0	4	8	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0010	2259	12	5	0	6	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0011	2259	7	1	3	0	1	2	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0012	2259	7	5	2	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0013	2259	6	6	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0014	2259	6	3	0	2	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0015	2259	5	0	4	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0016	2259	4	4	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0017	2259	4	2	2	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0018	2259	3	1	0	2	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0019	2259	3	0	0	3	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0020	2259	3	3	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0021	2259	3	0	0	2	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0022	2259	3	0	2	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0023	2259	3	0	0	3	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0024	2259	2	2	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0025	2259	2	2	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0026	2259	2	2	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0027	2259	2	0	0	2	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0028	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0029	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0030	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0031	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	1/0	c0032	2259	1	0	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0033	2259	1	0	0	0	1	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0034	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0035	2259	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0036	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0037	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0038	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0039	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0040	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0041	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0042	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0043	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0044	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0045	2259	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0046	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0047	2259	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0048	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0049	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0050	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0051	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0052	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704